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PIM Course: Lecture 14: Genome Sequence Alignment on PIM (Spring 2023)

· 08.06.2023 · 09:00:10 ··· Donnerstag ⭐ 0 🎬 0 📺 Onur Mutlu Lectures
Projects & Seminars, ETH Zürich, Spring 2023
Data-Centric Architectures: Fundamentally Improving Performance and Energy
(https://safari.ethz.ch/projects_and_seminars/spring2023/doku.php?id=processing_in_memory)

Lecture 14: A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems
Lecturer: Dr. Juan Gómez Luna (https://safari.ethz.ch/juan-gomez-luna/)
Lecturer: Professor Onur Mutlu (https://people.inf.ethz.ch/omutlu/)
Date: June 8, 2023

Lecture 14 Slides (pptx): https://safari.ethz.ch/projects_and_seminars/spring2023/lib/exe/fetch.php?media=p_s-pim-ss2023-meeting14-aftermeeting.pptx
Lecture 14 Slides (pdf): https://safari.ethz.ch/projects_and_seminars/spring2023/lib/exe/fetch.php?media=p_s-pim-ss2023-meeting14-aftermeeting.pdf

Recommended Readings:
====================
A Modern Primer on Processing in Memory
https://people.inf.ethz.ch/omutlu/pub/ModernPrimerOnPIM_springer-emerging-computing-bookchapter21-extended.pdf

Processing Data Where It Makes Sense: Enabling In-Memory Computation
https://people.inf.ethz.ch/omutlu/pub/ProcessingDataWhereItMakesSense_micpro19-invited.pdf

Processing-in-Memory: A Workload-Driven Perspective
https://people.inf.ethz.ch/omutlu/pub/processing-in-memory_workload-driven-perspective_IBMjrd19.pdf

Benchmarking a New Paradigm: An Experimental Analysis of a Real Processing-in-Memory Architecture
https://people.inf.ethz.ch/omutlu/pub/PrIM-UPMEM-Tutorial-Analysis-Benchmarking_arxiv21.pdf

Benchmarking Memory-Centric Computing Systems: Analysis of Real Processing-in-Memory Hardware
https://people.inf.ethz.ch/omutlu/pub/Benchmarking-Memory-Centric-Computing-Systems_cut21.pdf

SIMDRAM: An End-to-End Framework for Bit-Serial SIMD Computing in DRAM
https://people.inf.ethz.ch/omutlu/pub/SIMDRAM_asplos21.pdf

DAMOV: A New Methodology and Benchmark Suite for Evaluating Data Movement Bottlenecks
https://people.inf.ethz.ch/omutlu/pub/DAMOV-Bottleneck-Analysis-and-DataMovement-Benchmarks_IEEEaccess21.pdf

Intelligent Architectures for Intelligent Computing Systems
https://people.inf.ethz.ch/omutlu/pub/intelligent-architectures-for-intelligent-computingsystems-invited_paper_DATE21.pdf

RowHammer: A Retrospective
https://people.inf.ethz.ch/omutlu/pub/RowHammer-Retrospective_ieee_tcad19.pdf

RECOMMENDED LECTURE VIDEOS & PLAYLISTS:
========================================
P&S Data-Centric Architectures: Fundamentally Improving Performance and Energy (Fall 2022)
https://www.youtube.com/playlist?list=PL5Q2soXY2Zi8KzG2CQYRNQOVD0GOBrnKy

P&S Programming Heterogeneous Computing Systems with GPUs and other Accelerators (Fall 2022)
https://www.youtube.com/playlist?list=PL5Q2soXY2Zi8J0QbZ0c9ERLdnFRnO5U8C

Computer Architecture Fall 2022 Lectures Playlist:
https://www.youtube.com/playlist?list=PL5Q2soXY2Zi-cAls3cyauNzM7-74Eq31O

Digital Design and Computer Architecture Spring 2022 Livestream Lectures Playlist:
https://www.youtube.com/playlist?list=PL5Q2soXY2Zi97Ya5DEUpMpO2bbAoaG7c6

Featured Lectures:
https://www.youtube.com/watch?v=jVYCchBGNVc&list=PL5Q2soXY2Zi8VrmOTz44l2WupethSdh-M&index=1

Interview with Professor Onur Mutlu:
https://www.youtube.com/watch?v=8ffSEKZhmvo&list=PL5Q2soXY2Zi8VrmOTz44l2WupethSdh-M&index=9

The Story of RowHammer Lecture:
https://www.youtube.com/watch?v=sgd7PHQQ1AI&list=PL5Q2soXY2Zi8D_5MGV6EnXEJHnV2YFBJl&index=39

Accelerating Genome Analysis Lecture:
https://www.youtube.com/watch?v=r7sn41lH-4A&list=PL5Q2soXY2Zi8D_5MGV6EnXEJHnV2YFBJl&index=41

Memory-Centric Computing Systems Tutorial at IEDM 2021:
https://www.youtube.com/watch?v=H3sEaINPBOE&list=PL5Q2soXY2Zi8D_5MGV6EnXEJHnV2YFBJl&index=35

Intelligent Architectures for Intelligent Machines Lecture:
https://www.youtube.com/watch?v=GTieZPY4Wmc&list=PL5Q2soXY2Zi8D_5MGV6EnXEJHnV2YFBJl&index=38

· 08.06.2023 · 09:00:10 ··· Donnerstag
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